********************************************************************************
STREME - Sensitive, Thorough, Rapid, Enriched Motif Elicitation
********************************************************************************
MEME version 5.5.5 (Release date: Thu Sep 14 08:48:04 2023 +1000)

For further information on how to interpret these results please access https://meme-suite.org/meme.
To get a copy of the MEME Suite software please access https://meme-suite.org.

********************************************************************************


********************************************************************************
REFERENCE
********************************************************************************
If you use this program in your research, please cite:

Timothy L. Bailey,
"STREME: accurate and versatile sequence motif discovery",
Bioinformatics, Mar. 24, 2021.
********************************************************************************


ALPHABET= ACGT

strands: + -

Background letter frequencies
A 0.27 C 0.23 G 0.23 T 0.27 

MOTIF 1-CAGGAAR STREME-1
letter-probability matrix: alength= 4 w= 7 nsites= 140 E= 1.2e-001
 0.090940 0.619245 0.268721 0.021094
 0.858734 0.000408 0.012700 0.128158
 0.000480 0.000408 0.998632 0.000480
 0.025064 0.000408 0.974048 0.000480
 0.654284 0.256434 0.088802 0.000480
 0.920060 0.000408 0.079053 0.000480
 0.348319 0.000408 0.630178 0.021094

MOTIF 2-TGCCCA STREME-2
letter-probability matrix: alength= 4 w= 6 nsites= 98 E= 4.1e-001
 0.160445 0.000626 0.000626 0.838303
 0.000736 0.000626 0.997903 0.000736
 0.000736 0.681348 0.258273 0.059643
 0.000736 0.857110 0.000626 0.141528
 0.046939 0.951700 0.000626 0.000736
 0.589396 0.129636 0.000626 0.280342

MOTIF 3-DCWGCWGH STREME-3
letter-probability matrix: alength= 4 w= 8 nsites= 96 E= 1.5e+000
 0.275452 0.091888 0.232530 0.400130
 0.010873 0.834401 0.056620 0.098106
 0.355393 0.000290 0.004651 0.639665
 0.019597 0.070079 0.782056 0.128268
 0.128268 0.782056 0.070079 0.019597
 0.639665 0.004651 0.000290 0.355393
 0.098106 0.056620 0.834401 0.010873
 0.400130 0.232530 0.091888 0.275452

MOTIF 4-ATGACTCACT STREME-4
letter-probability matrix: alength= 4 w= 10 nsites= 24 E= 2.0e+000
 0.836726 0.041091 0.080861 0.041323
 0.001553 0.001320 0.001320 0.995807
 0.001553 0.001320 0.995575 0.001553
 0.876496 0.041091 0.041091 0.041323
 0.001553 0.796724 0.041091 0.160633
 0.001553 0.001320 0.001320 0.995807
 0.120863 0.796724 0.001320 0.081093
 0.956036 0.041091 0.001320 0.001553
 0.001553 0.558103 0.200171 0.240174
 0.160633 0.239941 0.080861 0.518565

********************************************************************************
Stopped because 3 consecutive motifs exceeded the E-value threshold (0.05).
********************************************************************************
COMMAND:	streme --verbosity 1 --oc streme_out -dna --minw 6 --maxw 15 --order 0 --bfile ./background --seed 0 --align center --time 4740 --totallength 4000000 --evalue --thresh 0.05 --p MOA3_gain_diff.fa
********************************************************************************
CPU:		noble-meme.grid.gs.washington.edu
********************************************************************************
FINALTIME:	3.44 seconds
********************************************************************************
